Profile

安水 良明 / Yoshiaki Yasumizu, M.D., Ph.D.

Education and Employment

• 2013 Apr - 2019 Mar Faculty of Medicine, Osaka University

  MD Researcher Education Program (Shimon Sakaguchi’s Lab)

• 2019 - 2021 Junior Resident, Osaka University Hospital
• 2019 - 2022 Visiting Academic Staff, Department of Neurology, Graduate School of Medicine, Osaka University
• 2020 - 2024 Junior Researcher, Institute for Open and Transdisciplinary Research Initiatives (OTRI) Integrated Frontier Research for Medical Science Division, Osaka University
• 2021 - 2024 Ph.D. Course, Experimental Immunology, Immunology Frontier Research Center, Osaka University

  Transdisciplinary Program for Biomedical Entrepreneurship and Innovation

• 2024 - present Overseas Research Fellow, Japan Society for the Promotion of Science (JSPS)
• 2024 - present Associate Research Scientist, Yale School of Medicine, Department of Neurology

Programming and Computation

Python, R, bash, CWL, Docker, GCP, git

Bioinformatics

• Single-cell RNA-seq / spatial transcriptome data analysis
• Bulk RNA-seq / ATAC-seq / ChIP-seq / WGBS
• Human Genome Analysis
• Machine Learning (deep learning, gradient boosting, MCMC and others)

Wet Lab Skills

• Cell preparation, Immunofluorescence labeling and cell-sorting
• Immunohistochemistry
• T-cell culture
• Mice experiments
• Library preparation for RNA-seq
• Library preparation and sequence using Nanopore Sequencers

Selected Publications

• Yasumizu Y, Kim N, Rivier CA, Moon J, Kojima S, Chen HL, Buitrago-Pocasangre N, Silberfeld A, Quinn E, Vaughn S, Morgan A, Huo S, Sumida TS, Ishigaki K, Longbrake EE, Falcone GJ, Hafler DA. Host Genetic Architecture between Epstein-Barr Virus Activity and Multiple Sclerosis Reveals Shared Pathways. medRxiv. 2025 Dec 15:2025.12.11.25342083. doi: 10.64898/2025.12.11.25342083. PMID: 41445616; PMCID: PMC12723777.
• Yasumizu Y, Deerhake ME, Moon J, Buitrago-Pocasangre N, Russo A, Wang H, Zhu B, Seibyl JP, Reddy V, Wang Q, Neish KJ, Spillantini MG, Posner DA, Clatworthy M, Sumida TS, Longbrake EE, Cedarbaum JM, Zhang L, Hafler DA. Myeloid-Driven Inflammation in Prodromal Parkinson’s Disease. bioRxiv. 2026 Apr 14:2025.05.16.654530v2. doi: 10.1101/2025.05.16.654530.
• Yasumizu Y (co-corresponding author), Kinoshita M, Zhang MJ, Motooka D, Suzuki K, Nojima S, Koizumi N, Okuzaki D, Funaki S, Shintani Y, Ohkura N, Morii E, Okuno T, Mochizuki H. Spatial transcriptomics elucidates medulla niche supporting germinal center response in myasthenia gravis-associated thymoma. Cell Rep. 2024 Sep 24;43(9):114677. doi: 10.1016/j.celrep.2024.114677. Epub 2024 Aug 23. PMID: 39180749.
• Wei J, Moon J, Yasumizu Y, Zhang L, Radassi K, Buitrago-Pocasangre N, Deerhake ME, Strauli N, Chen CW, Herman A, Pedotti R, Raposo C, Yim I, Pappalardo J, Longbrake EE, Sumida TS, Axisa PP, Hafler DA. Transcriptomic profiling after B cell depletion reveals central and peripheral immune cell changes in multiple sclerosis. J Clin Invest. 2025 Mar 11;135(11):e182790. doi: 10.1172/JCI182790. PMID: 40067358; PMCID: PMC12126227.
• Yasumizu Y, Takeuchi D, Morimoto R, Takeshima Y, Okuno T, Kinoshita M, Morita T, et al. Single-Cell Transcriptome Landscape of Circulating CD4+ T Cell Populations in Autoimmune Diseases. Cell Genomics. 2024. doi: 10.1016/j.xgen.2023.100473. Press: link.
• Yasumizu Y, Ohkura N, Murata H, Kinoshita M, Morii E, Shintani Y, Sakaguchi S, Okuno T, Mochizuki H. Myasthenia gravis-specific aberrant neuromuscular gene expression by medullary thymic epithelial cells in thymoma. Nat Commun. 2022;13:4230. doi: 10.1038/s41467-022-31951-8. Press: link.
• Kidani Y, Nogami W, Yasumizu Y, Kawashima A, Tanaka A, et al. CCR8-targeted specific depletion of clonally expanded Treg cells in tumor tissues evokes potent tumor immunity with long-lasting memory. Proc Natl Acad Sci U S A. 2022 Feb;119(7):e2114282119. doi: 10.1073/pnas.2114282119.
• Yasumizu Y, Hara A, Sakaguchi S, Ohkura N. VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data. Bioinformatics. 2020; btaa859. doi: 10.1093/bioinformatics/btaa859.
• Ohkura N, Yasumizu Y (co-first author), Kitagawa Y, Tanaka A, Nakamura Y, Motooka D, Nakamura S, Okada Y, Sakaguchi S. Regulatory T cell-specific epigenomic region variants are a key determinant of susceptibility to common autoimmune diseases. Immunity. 2020;52(6):1119-1132.e4. doi: 10.1016/j.immuni.2020.04.006.

Honors and Awards

• 2022 SCGJ2022 Bioinformatics Hackathon Grand prize
• 2022 Japan Society for the Promotion of Science Ikushi Prize
• 2021 Best Presentation Award, 50th Annual Meeting of the Japanese Society for Immunology
• 2021 Young Neuroimmunologist Award, 33rd Annual Meeting of the Japanese Society for Neuroimmunology
• 2021 Encouragement Award for Junior Residents, Osaka University Hospital
• 2020 Best Presentation Award at the Meeting of Young Virologists 2020 “VIRTUS: A comprehensive viral quantification method using multicellular and single cell RNA-seq
• 2018 Kaggle “Home Credit Default Risk” Silver medal
• 2018 Bioinformatics Contest 2018 (hosted by ITMO University, Russia) 18th prize, Honorable Mention
• 2017 Bioinformatics Technician Certification Examination (Best score)
• 2017 Oral presentation at the “2017 National Retreat for the Project for the Development and Training of the Next Generation of World-Leading MD Researchers” (Best Oral Presentation Award)
• 2017 19th Immunology Summer School 2017 in Shonan, Best Presentation Award, “Regulatory T Cell-Specific Epigenome and Its Association with Autoimmune Diseases”
• 2017 National Taiwan University Exchange Meeting (Excellent Presentation Award)

Grants and Funding

• 2026-2028 Robert E. Leet and Clara Guthrie Patterson Trust Mentored Research Award, Bank of America. “Mechanistic Dissection of B Cell Subsets in Multiple Sclerosis through Single-Cell Transcriptomics and Repertoire Profiling.” Role: PI.
• 2025 Breakthrough T1D, the Lupus Research Alliance, and the National Multiple Sclerosis Society, Common Mechanisms of Autoimmunity. “Understanding Role of B cells in the pathogenesis of Type 1 Diabetes and Multiple Sclerosis.” Role: PI.
• 2025-2026 The Michael J. Fox Foundation. “Integrative Single-Cell and Enhancer Profiling of CSF Immune Cells in Parkinson’s Disease.” Role: PI.
• 2024-2026 JSPS Overseas Research Fellowship, Japan Society for the Promotion of Science. “Deciphering the Immunological Landscape of Multiple Sclerosis in the Central Nervous System.”
• 2020-2022 Osaka University. “Pathophysiology and therapeutic development of amyotrophic lateral sclerosis (ALS) centered on endogenous retroviruses (ERVs).” Role: PI.

Software

• VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data. Manuscript in preparation. [github]

• Hiraoka Y, Yamada K, Kawasaki Y, Hirose H, Matsumoto Y, Ishikawa K, Yasumizu Y. ikra: RNA-seq pipeline centered on Salmon. Zenodo. 2019 Jul 27. doi: 10.5281/zenodo.3352573. [github]

Internship

• 2019 Bono Lab at Database Center for Life Science
• 2018 Genomics and Immunoregulation (J. Schultze Lab), Bonn University
• 2018 Statistical Genetics (Y. Okada Lab), Osaka University

Leadership Experience

• Osaka University Python Society founded (link)
• AIMS - AI Medical Research Society - Executive (link)

Community

• Japanese Society for Immunology
• Japanese Society of Neurology
• Japanese Society for Neuroimmunology

Peer Review

• Nature, Annals of Neurology, Journal of Clinical Investigation, iScience, Genome Medicine, Frontiers in Neurology, Clinical Immunology, Molecular Neurobiology, Mediastinum

Publications

• Nose Y, Yasumizu Y, Saito T, Nakamura Y, Jinushi K, Fujikawa K, Momose K, Yamashita K, Tanaka K, Yamamoto K, Makino T, Takahashi T, Ueyama A, Kurokawa Y, Sato E, Ohkura N, Sakaguchi S, Wada H, Eguchi H, Doki Y. PD-1 antibody-bound progenitor-exhausted CD8+ T cells in lymph nodes boost PD-1-blockade anti-tumor immunity in gastrointestinal cancer. Nat Commun. 2026 Apr 8;17(1). doi: 10.1038/s41467-026-70751-2. PMID: 41951588.
• Yasumizu Y. EBV grants B cells a license for immortality in the CNS. Sci Immunol. 2026 Mar 6;11(117):eaeg7147. doi: 10.1126/sciimmunol.aeg7147. PMID: 41790932.
• Yasumizu Y, Kim N, Rivier CA, Moon J, Kojima S, Chen HL, Buitrago-Pocasangre N, Silberfeld A, Quinn E, Vaughn S, Morgan A, Huo S, Sumida TS, Ishigaki K, Longbrake EE, Falcone GJ, Hafler DA. Host Genetic Architecture between Epstein-Barr Virus Activity and Multiple Sclerosis Reveals Shared Pathways. medRxiv. 2025 Dec 15:2025.12.11.25342083. doi: 10.64898/2025.12.11.25342083. PMID: 41445616; PMCID: PMC12723777.
• Takeuchi E, Yasumizu Y (corresponding author), Morita J, Ishikawa M, Ogawa K, Motooka D, Okuzaki D, Nagata M, Ishihara Y, Miyashita Y, Asano Y, Mori K, Morii E, Beck G, Saito Y, Murayama S, Mochizuki H, Nagano S. Single-nucleus multiome shows motor neuron glutamate overactivation in amyotrophic lateral sclerosis. Brain. 2025 Nov 11. doi: 10.1093/brain/awaf426. PMID: 41218062.
• Fukumoto A, Yamanaka T, Yanaizu M, Nakamori M, Hama M, Yasumizu Y, Shiotsu K, Matsumura T, Nutter CA, Kubota T, Fujimura H, Kino Y, Swanson MS, Inoue K, Takahashi MP. Transcriptome alterations underlying metabolic dysfunction and liver disease in myotonic dystrophy type 1. Hum Mol Genet. 2025 Oct 5;34(20):1718-1732. doi: 10.1093/hmg/ddaf124. PMID: 40801161; PMCID: PMC12498282.
• Okuno T, Koizumi N, Yasumizu Y. Pathogenesis of thymoma-associated myasthenia gravis: a narrative review. Mediastinum. 2025;9:26. doi: 10.21037/med-25-28. PMID: 41098393; PMCID: PMC12518592.
• Yasumizu Y, Deerhake ME, Moon J, Buitrago-Pocasangre N, Russo A, Wang H, Zhu B, Seibyl JP, Reddy V, Wang Q, Neish KJ, Spillantini MG, Posner DA, Clatworthy M, Sumida TS, Longbrake EE, Cedarbaum JM, Zhang L, Hafler DA. Myeloid-Driven Inflammation in Prodromal Parkinson’s Disease. bioRxiv. 2026 Apr 14:2025.05.16.654530v2. doi: 10.1101/2025.05.16.654530.
• Harada A, Yasumizu Y, Harada T, Fumoto K, Sato A, Maehara N, Sada R, Matsumoto S, Nishina T, Takeda K, Morii E, Kayama H, Kikuchi A. Hypoxia-induced Wnt5a-secreting fibroblasts promote colon cancer progression. Nat Commun. 2025 Apr 17;16(1):3653. doi: 10.1038/s41467-025-58748-9. PMID: 40246836; PMCID: PMC12006413.
• Wei J, Moon J, Yasumizu Y, Zhang L, Radassi K, Buitrago-Pocasangre N, Deerhake ME, Strauli N, Chen CW, Herman A, Pedotti R, Raposo C, Yim I, Pappalardo J, Longbrake EE, Sumida TS, Axisa PP, Hafler DA. Transcriptomic profiling after B cell depletion reveals central and peripheral immune cell changes in multiple sclerosis. J Clin Invest. 2025 Mar 11;135(11):e182790. doi: 10.1172/JCI182790. PMID: 40067358; PMCID: PMC12126227.
• Yamamura R, Kinoshita M, Yasumizu Y, Yata T, Kihara K, Motooka D, Shiraishi N, Sugiyama Y, Beppu S, Murata H, Koizumi N, Sano I, Koda T, Okuno T, Mochizuki H. Transcriptome signature in the blood of neuromyelitis optica spectrum disorder under steroid tapering. Front Immunol. 2025 Feb 3;16:1508977. doi: 10.3389/fimmu.2025.1508977. PMID: 39963140; PMCID: PMC11830620.
• Yasumizu Y, Hafler DA. Elucidating the role of autoreactive T cells and B cells in autoimmune hepatitis. J Clin Invest. 2025 Jan 16;135(2):e188538. doi: 10.1172/JCI188538. PMID: 39817449; PMCID: PMC11735092.
• Mori S, Kohyama M, Yasumizu Y, Tada A, Tanzawa K, Shishido T, Kishida K, Jin H, Nishide M, Kawada S, Motooka D, Okuzaki D, Naito R, Nakai W, Kanda T, Murata T, Terao C, Ohmura K, Arase N, Kurosaki T, Fujimoto M, Suenaga T, Kumanogoh A, Sakaguchi S, Ogawa Y, Arase H. Neoself-antigens are the primary target for autoreactive T cells in human lupus. Cell. 2024 Oct 17;187(21):6071-6087.e20. doi: 10.1016/j.cell.2024.08.025. Epub 2024 Sep 13. PMID: 39276775.
• Yasumizu Y, Kinoshita M, Zhang MJ, Motooka D, Suzuki K, Nojima S, Koizumi N, Okuzaki D, Funaki S, Shintani Y, Ohkura N, Morii E, Okuno T, Mochizuki H. Spatial transcriptomics elucidates medulla niche supporting germinal center response in myasthenia gravis-associated thymoma. Cell Rep. 2024 Sep 24;43(9):114677. doi: 10.1016/j.celrep.2024.114677. Epub 2024 Aug 23. PMID: 39180749.
• Nakai R, Yokota T, Tokunaga M, Takaishi M, Yokomizo T, Sudo T, Shi H, Yasumizu Y, Okuzaki D, Kokubu C, Tanaka S, Takaoka K, Yamanishi A, Yoshida J, Watanabe H, Kondoh G, Horie K, Hosen N, Sano S, Takeda J. A newly identified gene Ahed plays essential roles in murine haematopoiesis. Nat Commun. 2024 Jun 25;15(1):5090. doi: 10.1038/s41467-024-49252-7. PMID: 38918373; PMCID: PMC11199565.
• Yasumizu Y, Hagiwara M, Umezu Y, Fuji H, Iwaisako K, Asagiri M, Uemoto S, et al. Neural-Net-Based Cell Deconvolution from DNA Methylation Reveals Tumor Microenvironment Associated with Cancer Prognosis. NAR Cancer. 2024;6(2). doi: 10.1093/narcan/zcae022.
• Yasumizu Y, Takeuchi D, Morimoto R, Takeshima Y, Okuno T, Kinoshita M, Morita T, et al. Single-Cell Transcriptome Landscape of Circulating CD4+ T Cell Populations in Autoimmune Diseases. Cell Genomics. 2024. doi: 10.1016/j.xgen.2023.100473. Press: link.
• Macalinao ML, Inoue S, Tsogtsaikhan S, Matsumoto H, Bayarsaikhan G, Jian JY, Kimura K, et al. IL-27 Produced during Acute Malaria Infection Regulates Plasmodium-Specific Memory CD4+ T Cells. EMBO Mol Med. 2023;15(12):e17713. doi: 10.15252/emmm.202317713.
• Yasumizu Y, Ohkura N, Murata H, Kinoshita M, Morii E, Shintani Y, Sakaguchi S, Okuno T, Mochizuki H. Myasthenia gravis-specific aberrant neuromuscular gene expression by medullary thymic epithelial cells in thymoma. Nat Commun. 2022;13:4230. doi: 10.1038/s41467-022-31951-8. Press: link.
• Murata H, Kinoshita M, Yasumizu Y, Motooka D, Beppu S, Shiraishi N, Sugiyama Y, et al. Cell-Free DNA Derived From Neutrophils Triggers Type 1 Interferon Signature in Neuromyelitis Optica Spectrum Disorder. Neurol Neuroimmunol Neuroinflamm. 2022;9(3):e1149. doi: 10.1212/NXI.0000000000001149.
• Kidani Y, Nogami W, Yasumizu Y, Kawashima A, Tanaka A, et al. CCR8-targeted specific depletion of clonally expanded Treg cells in tumor tissues evokes potent tumor immunity with long-lasting memory. Proc Natl Acad Sci U S A. 2022 Feb;119(7):e2114282119. doi: 10.1073/pnas.2114282119.
• Abdelhamid RF, Ogawa K, Beck G, Yasumizu Y, Jinno J, Baba K, Nagai Y, et al. PiRNA/PIWI Protein Complex as Potential Biomarkers in Sporadic Amyotrophic Lateral Sclerosis. Mol Neurobiol. 2021. doi: 10.1007/s12035-021-02686-2.
• Beppu S, Kinoshita M, Wilamowski J, Suenaga T, Yasumizu Y, Ogawa K, Ishikura T, et al. High Cell Surface Expression and Peptide Binding Affinity of HLA-DQA1*05:03, a Susceptible Allele of Neuromyelitis Optica Spectrum Disorders (NMOSD). Sci Rep. 2022;12(1):1-12. doi: 10.1038/s41598-021-04074-1.
• Harada A, Matsumoto S, Yasumizu Y, Akama T, Eguchi H, Kikuchi A. Recruitment of KRAS downstream target ARL4C to membrane protrusions accelerates pancreatic cancer cell invasion. eLife. 2021:e66721. doi: 10.7554/eLife.66721. Press: link.
• Ishikura T, Kinoshita M, Shimizu M, Yasumizu Y, Motooka D, Okuzaki D, Yamashita K, et al. Anti-AQP4 Autoantibodies Promote ATP Release from Astrocytes and Induce Mechanical Pain in Rats. J Neuroinflammation. 2021;18(1):181. doi: 10.1186/s12974-021-02232-w.
• Matsuo Y, Komiya S, Yasumizu Y, Yasuoka Y, Mizushima K, Takagi T, Kryukov K, Fukuda A, Morimoto Y, Naito Y, Okada H, Bono H, Nakagawa S, Hirota K. Full-Length 16S rRNA Gene Amplicon Analysis of Human Gut Microbiota Using MinION Nanopore Sequencing Confers Species-Level Resolution. BMC Microbiol. 2021. doi: 10.1186/s12866-021-02094-5.
• Yasumizu Y, Hara A, Sakaguchi S, Ohkura N. VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data. Bioinformatics. 2020; btaa859. doi: 10.1093/bioinformatics/btaa859.
• Shime H, Odanaka M, Tsuiji M, Matoba T, Imai M, Yasumizu Y, Uraki R, Minohara K, Watanabe M, Bonito AJ, Fukuyama H, Ohkura N, Sakaguchi S, Morita A, Yamazaki S. Proenkephalin+ regulatory T cells expanded by ultraviolet B exposure maintain skin homeostasis with a healing function. Proc Natl Acad Sci U S A. 2020;202000372. doi: 10.1073/pnas.2000372117. Press: link.
• Ohkura N, Yasumizu Y (co-first author), Kitagawa Y, Tanaka A, Nakamura Y, Motooka D, Nakamura S, Okada Y, Sakaguchi S. Regulatory T cell-specific epigenomic region variants are a key determinant of susceptibility to common autoimmune diseases. Immunity. 2020;52(6):1119-1132.e4. doi: 10.1016/j.immuni.2020.04.006.
• Yasumizu Y, Sakaue S, Konuma T, Suzuki K, Matsuda K, Murakami Y, Kubo M, Palamara PF, Kamatani Y, Okada Y. Genome-wide natural selection signatures are linked to genetic risk of modern phenotypes in the Japanese population. Mol Biol Evol. 2020. doi: 10.1093/molbev/msaa005. Press: link.
• Sekido Y, Yasumizu Y (co-first author), Nishimura J, Kayama H, Matsuno H, Ogino T, Miyoshi N, Takahashi H, Haraguchi N, Hata T, Matsuda C, Doki Y, Mori M, Takeda K, Ohkura N, Sakaguchi S, Mizushima T. Innate Myeloid Cell Subset-Specific Gene Expression Patterns in the Human Colon are Altered in Crohn’s Disease Patients. Digestion. 2019;99(2):143-158. doi: 10.1159/000490890.

Presentations

• 2026 FOCIS Annual Meeting, oral presentation, “Understanding Role of B cells in the Pathogenesis of Type 1 Diabetes and Multiple Sclerosis”
• 2026 AAI IMMUNOLOGY2026
• 2025 Race to Erase MS Symposium
• 2025 15th MGFA International Conference on Myasthenia and Related Disorders
• 2022 AJACS online 14, Lecture for RNA-seq analysis on browser (120 min, 283 participants) https://biosciencedbc.jp/event/ajacs/ajacs95.html
• 2022 NGS EXPO 2022 oral presentation, poster presentation, chair
• 2022 Nagoya Neurology Summer School
• 2022 63rd Annual Meeting of the Japanese Society of Neurology, Symposium
• 2022 Japanese Society of Neurology “Bioinformatics Hands-on for Neurologists 2021” Planning, Hands-on, Lecture. https://www.neurology-jp.org/news/pdf/news_20211202_01_01.pdf
• 2021 Single-cell 2021 Osaka Online seminar https://www2.aeplan.co.jp/singlecell2021_osaka/profile.html#CV03
• 2020 The 2nd Japanese Medical AI Contest 2020
• 2019 The 48th Annual Meeting of the Japanese Society for Immunology, Oral presentation “Single-cell transcriptomic atlas of thymic Treg development”
• 2017 The 46th Annual Meeting of the Japanese Society for Immunology Oral presentation “Significance of the regulatory T cell-specific epigenetics in autoimmune disease susceptibility”
• 2017 The 5th NGS field meeting Poster presentation

Publications (Japanese)

• 安水良明, 大倉永也 「シングルセル解析における実験デザイン」, 「CELLxGENEによるインタラクティブなデータ共有」 実験医学増刊 「実験デザインからわかる　シングルセル研究実践テキスト」 (2024)
• 安水良明 「Chapter9　リードカウント以降の統合解析をウェブブラウザで行う 〜iDEP − ノーコードでRNA-Seq下流解析」 実験医学別冊 改訂版RNA-Seqデータ解析 WETラボのための鉄板レシピ (2023)
• 安水良明 「胸腺腫と重症筋無力症」 病理と臨床 10月号 (2023)
• 安水良明, 大倉永也 「制御性T細胞のシングルセル解析」 炎症と免疫 vol.30 no.6 p486-489 (2022)
• 安水良明 「ブラウザで完結するRNA-seq解析」 「10．iDEP，BioJupies，RaNA-seq ─ ウェブブラウザで完結するRNA-seq解析ツール」 実験医学増刊 vol.40 no.17 バイオDBとウェブツール　ラボで使える最新70選 知る・学ぶ・使う、バイオDX時代の羅針盤 (2022) (link)
• 安水良明, 大倉永也 「シングルセル解析」 皮膚科 vol.2 no.4 p427-432 (2022)
• 安水良明, 小河浩太郎, 望月秀樹 「バイオインフォマティクス」 CLINICAL NEUROSCIENCE vol.39 no.9 p1133-1138 (2021)
• 安水良明, 大倉永也 「制御性T細胞特異的エピゲノムは，自己免疫疾患感受性に強く影響する」臨床免疫・アレルギー科第75巻第3号 p253-258 (2021)
• 安水良明, 大倉永也 「免疫制御,免疫寛容,免疫記憶」 日本医師会雑誌 第149巻・特別号（2） pS61-65 (2020)
• 安水良明, 岡田随象 「大規模ヒトゲノム解析による日本人集団の適応進化の解明」 腎臓内科・泌尿器科 Vol.10 No.6 p566-571 (2019)
• 大田達郎, 石井学, 末竹裕貴, 丹生智也, 山田航輝, 安水良明 「CWL（Common Workflow Language）があれば, DRY解析はもう怖くない」 次世代シーケンサー DRY解析教本 改訂第2版 p331-338 (2019)
• 安水良明, 中村やまみ, 大倉永也 「T細胞におけるシングルセル解析」 実験医学増刊 「シングルセルゲノミクス」 Vol.37 No.20 p3421-3427 (2019)
• 安水良明 「Chapter 1　まずはこれだけ! 解析環境を整える～Mac+Biocondaを中心に」 実験医学別冊 RNA-Seqデータ解析 WETラボのための鉄板レシピ p10-27 (2019) (link)
• 大倉永也、安水良明 「Treg分化におけるエピゲノムの役割」 医学のあゆみ Vol. 268 No. 13 p1030-1035 (2019)
• 安水良明 「Pythonで医学に貢献を」 実験医学 Vol. 37 No. 4 p621 (2019) (link)